• "NMR-based docking of protein-protein complexes: the human UbcH5b-CNOT4 ubiquitination complex" Cyril Dominguez, Ph.D. Thesis, June 2004, ISBN 90-393-3721-7. | Read More >>

When using HADDOCK cite:

• Cyril Dominguez, Rolf Boelens and Alexandre M.J.J. Bonvin (2003). HADDOCK: a protein-protein docking approach based on biochemical and/or biophysical information. J. Am. Chem. Soc. 125, 1731-1737. | Read More >>
• S.J. de Vries, A.D.J. van Dijk, M. Krzeminski, M. van Dijk, A. Thureau, V. Hsu, T. Wassenaar and A.M.J.J. Bonvin (2007) HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets. Proteins: Struc. Funct. & Bioinformatic 69, 726-733. | Read More >>

And, if used, cite in addition any publication related to the use of RDCs, diffusion anisotropy data, protein-DNA docking and/or solvated docking (see below)

• A.D.J. van Dijk, D. Fushman and A.M.J.J. Bonvin (2005) Various strategies of using residual dipolar couplings in NMR-driven protein docking: Application to Lys48-linked di-ubiquitin and validation against 15N-relaxation data. Proteins: Struc. Funct. & Bioinformatics, 60, 367-381. | Read More >>

• A.D.J. van Dijk, R. Kaptein, R. Boelens and A.M.J.J. Bonvin (2006) Combining NMR relaxation with chemical shift perturbation data to drive protein-protein docking. J. Biomol. NMR, 34, 237-244. | Read More >>

• A.D.J. van Dijk and A.M.J.J. Bonvin (2006) Solvated docking: introducing water into the modelling of biomolecular complexes. Bioinformatics, 22 2340-2347. | Read More >>

• M. van Dijk, A.D.J. van Dijk, V. Hsu, R. Boelens and A.M.J.J. Bonvin (2006) "Information-driven Protein-DNA Docking using HADDOCK: it is a matter of flexibility." Nucl. Acids Res., 34 3317-3325. | Read More >>

• A.D.J. van Dijk, S.J. de Vries, C. Dominguez, H. Chen, H.-X. Zhou and A.M.J.J. Bonvin (2005) "Data-driven docking: HADDOCKs adventures in CAPRI." Proteins: Struc. Funct. & Bioinformatics, 60, 232-238. | Read More >>
• S.J. de Vries, A.D.J. van Dijk, M. Krzeminski, M. van Dijk, A. Thureau, V. Hsu, T. Wassenaar and A. M. J. J. Bonvin (2007) "HADDOCK versus HADDOCK: New features and performance of HADDOCK2.0 on the CAPRI targets." Proteins: Struc. Funct. & Bioinformatic, advanced online publication. | Read More >>

• Aalt D.J. van Dijk, Rolf Boelens and Alexandre M.J.J. Bonvin (2005) "Data-driven docking for the study of biomolecular complexes." FEBS Journal,272, 293-312. | Read More >>

• D. Owen, P.N. Lowe, D. Nietlispach, C.E. Brosnan, D.Y. Chirgadze, P.J. Parker, T.L. Blundell and H.R. Mott (2003) "Molecular dissection of the interaction between the small G proteins Rac1 and RhoA and protein kinase C-related kinase 1 (PRK1)." J. Biol. Chem., 278 50578-5087. | Read More >>
• A. van Drogen-Petit, C. Zwahlen, M. Peter and A.M.J.J. Bonvin (2004) "Insight into molecular interactions between two PB1 domains." J. Mol. Biol., 336/5 1195-1210. | Read More >>
• T.D. Mueller, M. Kamionka and J. Feigon (2004) "Specificity of the interaction between ubiquitin-associated domains and ubiquitin." J. Biol. Chem., 279 11926-11936. | Read More >>
• F. Arnesano, L. Banci, I. Bertini and A.M.J.J. Bonvin (2004) "A docking approach to the study of copper trafficking proteins: interaction between metallochaperones and soluble domains of copper ATPases." Structure, 12 669-676. | Read More >>
• C. Dominguez, A.M.J.J. Bonvin, G.S. Winkler, F.M.A. van Schaik, H.Th.M. Timmers and R.Boelens (2004) "Structural model of the UbcH5B/CNOT4 complex revealed by combining NMR, mutagenesis and docking approaches." Structure, 12 633-644. | Read More >>
• X.M. Yuan, P. Simpson, C. Mckeown, H. Kondo, K. Uchiyama, R. Wallis, I. Dreveny, C. Keeth, X.D. Zhang, C. Robinson, P. Freemont and S. Matthews (2004) "Structure, dynamics and interactions of p47, a major adaptor of the AAA ATPase, p97." EMBO J. 23(7) 1463-1473. | Read More >>
• M.E. Stauffer and W.J. Chazin (2004) "Physical Interaction between Replication Protein A and Rad51 Promotes Exchange on Single-stranded DNA" J. Biol. Chem. 279(24) 25638-25645. | Read More >>
• R.J.Y. Simpson, S.H.Y. Lee, N. Bartle, E.Y. Sum, J.E. Visvader, J.M. Matthews, J.P. Mackay and M. Crossley (2004) "A Classic Zinc Finger from Friend of GATA Mediates an Interaction with the Coiled-coil of Transforming Acidic Coiled-coil 3." J. Biol. Chem.,279, 39789-39797 | Read More >>
• B. Dangi, A.M. Gronenborn, J.L. Rosner and R.G. Martin (2004) "Versatility of the carboxy-terminal domain of the alpha subunit of RNA polymerase in transcriptional activation: use the DNA contact site as a protein contact site for MarA." Mol. Microbiol.,54, 45-59 | Read More >>
• N.U. Jain, T.J. Wyckoff, C.R. Raetz, J.H. Prestegard (2004) "Rapid Analysis of Large ProteinProtein Complexes Using NMR-derived Orientational Constraints: The 95 kDa Complex of LpxA with Acyl Carrier Protein." J. Mol. Biol.,343, 1379-1389. | Read More >>
• B.J. Westman, J.Perdomo, J.M. Matthews, M. Crossley, and J.P. Mackay (2004) "Structural Studies on a Protein-Binding Zinc-Finger Domain of Eos Reveal Both Similarities and Differences to Classical Zinc Fingers. Biochemistry, 43, 13318-13327. | Read More >>
• B.K. Sharpe, C.K. Liew, A.H. Kwan, J.A. Wilce, M. Crossley, J.M. Matthews and J.P. Mackay (2005) "Assessment of the Robustness of a Serendipitous Zinc Binding Fold: Mutagenesis and Protein Grafting. Structure, 13, 257-266. | Read More >>
• A.N. Volkov, D. Ferrari, J.A.R. Worrall, A.M.J.J. Bonvin and M. Ubbink (2005) "The orientations of cytochrome c in the highly dynamic complex with cytochrome b5 visualized by NMR and docking using HADDOCK." Protein Science, 14, 799-811. | Read More >>
• R. Varadan, M. Assfalg, S. Raasi, C. Pickart and D. Fushman (2005) "Structural Determinants for Selective Recognition of a Lys48-Linked Polyubiquitin Chain by a UBA Domain." Mol. Cell 18, 687-698. | Read More >>
• I. Diaz-Moreno, A. Diaz-Quintana, M. Ubbink and M.A. De la Rosa (2005) "An NMR-based docking model for the physiological transient complex between cytochrome f and cytochrome c6." FEBS Letters 579, 2891-2896. | Read More >>
• G. Nicastro, R.P. Menon, L. Masino, P.P. Knowles, N.Q. McDonald, and A. Pastore (2005) "The solution structure of the Josephin domain of ataxin-3: Structural determinants for molecular recognition." PNAS 102,10493-10498. | Read More >>
• S. Deep, S.-C. Im, E.R.P. Zuiderweg and L. Waskell (2005) "Characterization and Calculation of a Cytochrome c-Cytochrome b5 Complex Using NMR Data." Biochemistry 44, 10654-10668. | Read More >>
• O. Hantsche, S. Wiesner, T. Guttler, C.D. Mackereth, L.L. Remsing Rix, Z. Mikes, J. Dehne, D. Gorlich, M. Sattler and G. Superti-Furga (2005) "Structural Basis for the Cytoskeletal Association of Bcr-Abl/c-Abl." Mol. Cell. 19, 461-473. | Read More >>
• V. Nogueraa, O. Walker, N. Rouhier, J.-P. Jacquot, I. Krimm and J.-. Lancelin (2005) "NMR Reveals a Novel GlutaredoxinGlutaredoxin Interaction Interface." J. Mol. Biol. 353, 629-641. | Read More >>
• B. Card, P.J.A. Erbel and K.H. Gardner (2005) "Structural Basis of ARNT PAS-B Dimerization: Use of a Common Beta-sheet Interface for Hetero- and Homodimerization." J. Mol. Biol. 353, 664-677. Read More >>
• C.K. Liew, R.J.Y. Simpson, A.H.Y. Kwan, L.A. Crofts, F.E. Loughlin, J.M. Matthews, M. Crossley and J.P. Mackay (2005) "Zinc fingers as protein recognition motifs: Structural basis for the GATA-1/Friend of GATA interaction" PNAS 102,583-588. | Read More >>
• I. Bertini, G. Cavallaro and A. Rosato (2005) "A structural model for the adduct between cytochrome c and cytochrome c oxidase." J. Biol. Inorg. Chem. 10,613-624. | Read More >>
• S.J. Zhang, Z.M. Hu and W.D. Chen Y (2005) "Small ubiquitin-like modifier (SUMO) recognition of a SUMO binding motif - A reversal of the bound orientation." J. Biol. Chem. 280,40122-40129. | Read More >>
• H.S. Ding, Y.D. Yang, J.H. Zhang, J.H. Wu, H.T. Liu HY, Y.Y. Shi (2005) "Structural basis for SUMO-E2 interaction revealed by a complex model using docking approach in combination with NMR data." Proteins 61, 1050-1058. | Read More >>
• L.P. Yu, C.H. Sun, D.Y. Song, J.W. Shen, N. Xu, A. Gunasekera, P.J. Hajduk and E.T. Olejniczak (2005) "Nuclear magnetic resonance structural studies of a potassium channel-charybdotoxin complex." Biochemistry 44, 15834-15841. | Read More >>
• B.E. Correia, N. Loureiro-Ferreira, J.R. Rodrigues and R.M.M. Brito (2006) "A structural model of an amyloid protofilament of Transthyretin." Prot. Sci. 15, 28-32. | Read More >>
• B.O. Smith, N.C. Picken, G.D. Westrop, K. Bromek, J.C. Mottram and G.H. Coombs (2006) "The Structure of Leishmania mexicana ICP Provides Evidence for Convergent Evolution of Cysteine Peptidase Inhibitors." J. Biol. Chem. 281, 5821-5828. | Read More >>
• M.J. Lewis, L.F. Saltibus, D.D. Hau, W. Xiao and L.o Spyracopoulos (2006) "Structural Basis for Non-Covalent Interaction Between Ubiquitin and the Ubiquitin Conjugating Enzyme Variant Human MMS2." J. Biomol. NMR. 34, 89-100. | Read More >>
• L. Muresanu, P. Pristovsek, F. Loehr, O. Maneg, M.D. Mukrasch, H. Ruterjans, B. Ludwig and C. Luecke (2006) "The electron transfer complex between cytochrome C552 and the CuA domain of the Thermophilus ba3 oxidase - a combined NMR and computational approach. J. Biol. Chem., advanced online publication. | Read More >>
• X. Zhang, Y. Hu, X. Guo, E. Lescop, Y. Li, B. Xia and C. Jin (2006) "The Bacillus subtilis YkuV Is a Thiol:Disulfide Oxidoreductase Revealed by Its Redox Structures and Activity." J. Biol. Chem., 281, 8296-8304. | Read More >>
• A. Koglin, M.R. Mofid, F. Löhr, B. Schäfer, V.V. Rogov, M.-M. Blum, T. Mittag, M.A. Marahiel, F. Bernhard, V. Dötsch (2006) "Conformational Switches Modulate Protein Interactions in Peptide Antibiotic Synthetases." Science, 312, 273-276. | Read More >>
• Y.G. Chang, A.X. Song, Y.C. Gao, Y.H. Shi, X.J. Lin, X.T. Cao, D.H. Lin and H.Y. Hu (2006) "Solution structure of the ubiquitin-associated domain of human BMSC-UbP and its complex with ubiquitin." Protein Science 15 1248-1259. | Read More >>
• L. Banci, I. Bertini, S. Ciofi-Baffoni, N.G. Kandias, N.J. Robinson, G.A. Spyroulias, X.-C. Su, S. Tottey and M. Vanarotti (2006) "The delivery of copper for thylakoid import observed by NMR." Proc. Natl. Acad. Sci. 103 8320-8325. | Read More >>
• A.P. Herbert, D. Uhrin, M. Lyon, M.K. Pangburn and P.N. Barlow (2006) "Disease-associated Sequence Variations Congregate in a Polyanion Recognition Patch on Human Factor H Revealed in Three-dimensional Structure." J. Biol. Chem., 281, 16512-16520. | Read More >>
• M. Slutzkia, D.A. Jaitina, T.B. Yehezkela and G. Schreiber (2006) "Variations in the Unstructured C-terminal Tail of Interferons Contribute to Differential Receptor Binding and Biological Activity." J. Mol. Biol., 360, 1019-1030. | Read More >>
• S.R. Quadt-Akabayov, J.H. Chill, R. Levy, N. Kessler and J. Anglister (2006) "Determination of the human type I interferon receptor binding site on human interferon-?2 by crosssaturation and an NMR-based model of the complex." Prot. Sci, 15, 2656-2668. | Read More >>
• Z. Lin, S. Sriskanthadevan, H. Huang, C.-H. Siu and D. Yang (2006) "Solution structures of the adhesion molecule DdCAD-1 reveal new insights into Ca2+-dependent cell-cell adhesion." Nat. Struc. Mol. Biol., 13, 1016-1022. | Read More >>
• B. Zhou, J. Zhang, S. Liu, S. Reddy, F. Wang and Z.-Y. Zhang (2006) "Mapping ERK2-MKP3 Binding Interfaces by Hydrogen/Deuterium Exchange Mass Spectrometry." J. Biol. Chem., 281, 38834-38844. | Read More >>
• G.A. Jensen, O.M. Andersen, A.M.J.J. Bonvin, I. Bjerrum-Bohr, M. Etzerodt, H.C. Thogersen, F.M. Poulsen1 and B.B. Kragelund (2006) "Binding Site Structure of One LRP/RAP Complex -Implications for a Common Ligand/Receptor Binding Motif." J. Mol. Biol., 362 700-716. | Read More >>
• B. Rodamilans, I.G. Munoz, E. Bragado-Nilsson, M.R. Sarrias, O. Padilla, F.J. Blanco, F. Lozano and G. Montoya (2007) "Crystal structure of the third extracellular domain of CD5 reveals the fold of a group B scavenger cysteine-rich receptor domain." J. Biol. Chem., 282, 12669-12677. | Read More >>
• A.D.J. van Dijk, S. Ciofo-Bafoni, L. Banci, I. Bertini, R. Boelens and A. M. J. J. Bonvin (2007) "Modelling protein-protein complexes involved in the cytochrome c oxidase copper-delivery pathway." J. Proteome Research, 6 1530-1539. | Read More >>
• H. Da, N. Shen, D. Arac and J. Rizo (2007) "A Quaternary SNARE???Synaptotagmin???Ca2+???Phospholipid Complex in Neurotransmitter Release." J. Mol. Biol., 367, 848-863. | Read More >>
• W. Feng, H. Wu, L.-N. Chan and M. Zhang (2007) "The Par-3 NTD adopts a PB1-like structure required for Par-3 oligomerization and membrane localization." EMBO J., 26, 2786-2796. | Read More >>
• P. Gutierrez, G. Kozlov, L. Gabrielli, D. Elias, M.J. Osborne, I.E. Gallouzi and K. Gehring (2007) "Solution Structure of YaeO, a Rho-specific Inhibitor of Transcription Termination." J. Biol. Chem., 282, 23348-23353. | Read More >>
• J. Wang, W. Hu, S. Cai, B Lee, J. Song and Y. Chen (2007) "The Intrinsic Affinity between E2 and the Cys Domain of E1 in Ubiquitin-like Modifications" Mol. Cell, 27, 228-237. | Read More >>
• R.J.M. Abbott, I. Spendlove, P. Roversi, H. Fitzgibbon, V. Knott, P. Teriete, J.M. McDonnell, P.A. Handford and S.M. Lea (2007) ">Structural and Functional Characterization of a Novel T Cell Receptor Co-regulatory Protein Complex, CD97-CD55" J. Biol. Chem., 282, 22023-22032. Read More >>
• A. Fontayne, B. De Maeyer, M. De Maeyer, M. Yamashita, T. Matsushita and H. Deckmyn (2007) "Paratope and Epitope Mapping of the Antithrombotic Antibody 6B4 in Complex with Platelet Glycoprotein Ibalpha. J. Biol. Chem., 282 23517-23524. | Read More >>
• C. Williams, D. Rezgui, S.N. Prince, O.J. Zaccheo, E.J. Foulstone, B.E. Forbes, R.S. Norton, J. Crosby, A. Bassim Hassan and M.P. Crump (2007) "Structural Insights into the Interaction of Insulin-like Growth Factor 2 with IGF2R Domain 11. Structure, 15 1065-1078. | Read More >>
• A. Abadou, M. Gautel and M. Pfuhl (2007) "Disecting the N-terminal myosin binding site of human cardiac myosin binding protein C: Structure and myosin binding of domain C2." J. Biol. Chem., 282 9204-9215 | Read More >>
• C. Pimentel, S. M'Barek, V. Visan, S. Grissmer, F. Sampieri, J.-M. Sabatier, H. Darbon and Z. Fajloun (2008) "Chemical synthesis and 1H-NMR 3D structure determination of AgTx2-MTX chimera, a new potential blocker for Kv1.2 channel, derived from MTX and AgTx2 scorpion toxins." Prot Sci., 17 107-118 | Read More >>
• N. Korotkova, Y. Yang, I. Le Trong, E. Cota, B. Demeler, J. Marchant, W.E. Thomas, R.E. Stenkamp, S.L. Moseley and S. Matthews (2008) "Binding of Dr adhesins of Escherichia coli to carcinoembryonic antigen triggers receptor dissociation" Mol. Microbio., 67 420-434 | Read More >>
• A.R. Diaz, S. Stephenson, J.M. Green, V.M. Levdikov, A.J. Wilkinson and M. Perego (2008) "Functional role for a conserved aspartate in the Spo0E signature motif involved in the dephosphorylation of the bacillus subtilis sporulation regulator Spo0A." J. Biol. Chem., 283 2962-2972 | Read More >>
• K. Seidel, O.C. Andronesi, J. Krebs, C. Griesinger, H.S. Young, S. Becker and M. Baldus (2008) "Structural Characterization of Ca2+-ATPase-Bound Phospholamban in Lipid Bilayers by Solid-State Nuclear Magnetic Resonance (NMR) Spectroscopy." Biochemistry, 47 4369-4376 | Read More >>

• G.H. Gao, K.C. Prutzman, M.L. King, D.M. Scheswohl, E.F. DeRose, R.E. London, M.D. Schaller and S.L. Campbell (2004) "NMR solution structure of the focal adhesion targeting domain of focal adhesion kinase in complex with a paxillin LD peptide - Evidence for a two-site binding model." J. Biol. Chem., 279 8441-8451. | Read More >>
• A.G. Tzakos, P. Fuchs, N.A.J. van Nuland, A. Troganis, T. Tselios, S. Deraos, J. Matsoukas, I.P. Gerothanassis and A.M.J.J. Bonvin (2004) "NMR and MD Studies of an Autoimmune MBP Peptide and its Antagonist. Structural Implications for the MHC II (I-Au) Peptide Complex through Docking Calculations." Eur. J. Biochem. ,271, 3399-3413. | Read More >>
• B. Ritter, A.Y. Denisov, J. Philie, C. Deprez, E.C. Tung, K. Gehring and P.S. McPherson, PS (2004) "Two WXXF-based motifs in NECAPs define the specificity of accessory protein binding to AP-1 and AP-2" EMBO J., 23, 3701-3710. | Read More >>
• A.Y. Denisov, G. Chen, T. Sprules, T. Moldoveanu, P. Beauparlant and K. Gehring (2006) "Structural Model of the BCL-w-BID Peptide Complex and Its Interactions with Phospholipid Micelles." Biochemistry 45, 2250-2256. | Read More >>
• V. Musi, B. Birdsall, G. Fernandez-Ballester, R. Guerrini, S. Salvatori, L. Serrano, A. Pastore (2006) "New approaches to high-throughput structure characterization of SH3 complexes: The example of Myosin-3 and Myosin-5 SH3 domains from S-cerevisiae" Prot. Sci., 15, 795-807. | Read More >>
• A.P. Rideau, C. Gooding, P.J. Simpson, T.P. Monie, M. Lorenz., S. Hüttelmaier, R.H. Singer, S. Matthews, S. Curry and C.W.J. Smith (2006) "A peptide motif in Raver1 mediates splicing repression by interaction with the PTB RRM2 domain." Nat. Struc. Mol. Biol., 13, 839-848. | Read More >>
• K. Ma, J.G. Forbes, G. Gutierrez-Cruz and K. Wang (2006) "Titin as a giant scaffold for integrating stress and Src homology domain 3-mediated signaling pathways." J. Biol. Chem., 281, 27539-27556. | Read More >>
• M.L. Reese, S. Dakoji, D.S. Bredt & V. Dötsch (2007) "The guanylate kinase domain of the MAGUK PSD-95 binds dynamically to a conserved motif in MAP1a." Nat. Struc. Mol. Biol., 14, 155-163. | Read More >>
• R.K. Mahadev, S.M. Di Pietro, J.M. Olson, H.L. Piao, G.S. Payne and M. Overduin (2007) "Structure of Sla1p homology domain 1 and interaction with the NPFxD endocytic internalization motif" EMBO J., 26, 1963-1971. | Read More >>
• S. Casares, E. AB, H. Eshuis, O. Lopez-Mayorga, N.A.J. van Nuland and F. Conejero-Lara (2007) "The high-resolution NMR structure of the R21A Spc-SH3:P41 complex: Understanding the determinants of binding affinity by comparison with Abl-SH3" BMC Struc. Biol., 7, 22. | Read More >>
• Y. Wei, S. Liu, J. Lausen, C. Woodrell, S. Cho, N. Biris, N. Kobayashi, Y. Wei, S. Yokoyama and M.H. Werner (2007) "A TAF4-homology domain from the corepressor ETO is a docking platform for positive and negative regulators of transcription." Nat. Struct. Mol. Biol., 14, 653-661. | Read More >>
• I. Gelis, A.M.J.J. Bonvin, D. Keramisanou, M. Koukaki, G. Gouridis, S. Karamanou, A. Economou and C.G. Kalodimos (2007) "Structural basis for signal sequence recognition by the translocase motor SecA determined by NMR" Cell, 131, 756-769. | Read More >>

• L. Volpon, I. D'Orso, C.R. Young, A.C. Frasch and K. Gehring (2005) "NMR Structural Study of TcUBP1, a Single RRM Domain Protein from Trypanosoma cruzi: Contribution of a Hairpin to RNA Binding" Biochemistry 44, 3708-3717. | Read More >>
• M.B. Kamphuis, A.M.J.J. Bonvin, M.C. Monti, M. Lemonnier, A. Munoz-Gomez, R.H.H. van den Heuvel, R. Diaz-Orejas and R. Boelens (2006) Model for RNA Binding and the Catalytic Site of the RNase Kid of the Bacterial parD Toxin-Antitoxin System." J. Mol. Biol., 357, 115-126. | Read More >>
• S. Singh, M.H. Hager, C. Zhang, B.R. Griffith, M. S. Lee, K. Hallenga, J.L. Markley and J. S. Thorson (2006) "Structural Insight into the Self-Sacrifice Mechanism of Enediyne Resistance." ACS Chem. Biol., 1, 451-460. | Read More >>
• H.R.A. Jonker, S. Ilin, S.K. Grimm, J. W&uouml;hnert and H. Schwalbe (2007) "L11 domain rearrangement upon binding to RNA and thiostrepton studied by NMR spectroscopy." Nucl. Acid Res., 35, 441-455. | Read More >>
• S. Cai, L. Zhu, Z. Zhang, and Y. Chen (2007) ">Determination of the Three-Dimensional Structure of the Mrf2-DNA Complex Using Paramagnetic Spin Labeling." Biochemistry, 46, 4943-4950. | Read More >>
• W. Liu, G. Vierke, A.-K.n Wenke, . Thomm and R. Ladenstein (2007) "Crystal Structure of the Archaeal Heat Shock Regulator from Pyrococcus furiosus: A Molecular Chimera Representing Eukaryal and Bacterial Features." J. Mol. Biol., 369, 474-488. | Read More >>
• R. Gamsjaeger, M.K. Swanton, F.J. Kobus, E. Lehtomaki, J.A. Lowry, A.H. Kwan, J.M. Matthews and J.P. Mackay (2008) "Structural and Biophysical Analysis of the DNA Binding Properties of Myelin Transcription Factor 1." J. Biol. Chem., 283, 5158-5167. | Read More >>
• V.A. Burns, B.G. Bobay, A. Basso, J. Cavanagh, C. Melander (2008) "Targeting RNA with cysteine-constrained peptides." Bioorg. & Med. Chem. Letters, 18 565-567. | Read More >>
• D. Bessiere, C. Lacroix, S. Campagne, V. Ecochard, V. Guillet, L. Mourey, F. Lopez, J. Czaplicki, P. Demange, A. Milon, J.-P. Girard and V. Gervais (2008) "Structure-function analysis of the thap-zinc finger of thap1, a large C2CH DNA-binding module linked to RB/E2F pathways" J. Biol. Chem., 283, 4352-4363. | Read More >>

• U. Schieborr, M. Vogtherr, B. Elshorst, M. Betz, S. Grimme, B. Pescatore, T. Langer, K. Saxena, H. Schwalbe (2005) "How Much NMR Data Is Required To Determine a Protein-Ligand Complex Structure?" ChemBioChem 6, 1-9. | Read More >>
• L. Rutten, J. Geurtsen, W. Lambert, J.J. Smolenaers, A.M.J.J. Bonvin, A. de Haan, P. van der Ley, M.R. Egmond, P. Gros and J. Tommassen. (2006) "Crystal structure and catalytic mechanism of the LPS 3-O-deacylase PagL from Pseudomonas aeruginosa." Proc. Natl. Acad. Sci., 103 7071-7076-244. | Read More >>
• N. Zhang, L. Liu, F. Liu, C.R. Wagner, P.E. Hanna and K.J. Walters (2006) "NMR-based Model Reveals the Structural Determinants of Mammalian Arylamine N-Acetyltransferase Substrate Specificity." J. Mol. Biol., 363, 188-200. | Read More >>
• S. Singh, M.H. Hager, C. Zhang, B.R. Griffith, M. S. Lee, K. Hallenga, J.L. Markley and J. S. Thorson (2006) "Structural Insight into the Self-Sacrifice Mechanism of Enediyne Resistance." ACS Chem. Biol., 1, 451-460. | Read More >>
• J. Song, K.Q. Zhao, C.L. Loushin Newman, D.A. Vinarov and J.L. Markley (2007) "Solution structure of human sorting nexin 22." Prot. Sci., 16 , 807-814. | Read More >>
• L. Mollica, F. De Marchis, A. Spitareli, C. Dallacosta, D. Pennacchini, M. Zmai, A. Agresti, L. Trisciuoglio, G. Musco and M.E. Bianchi (2007) "Glycyrrhizin Binds to High-Mobility Group Box 1 protein and Inhibits its Cytokine Activities." Chemistry & Biology, 14, 431-441. | Read More >>
• A. M. Wu, T. Singh, J.-H. Liu, M. Krzeminski, R. Russwurm, H.-C. Siebert, A. M. J. J. Bonvin, Sabine Andre, H.-J. Gabius (2007) "Activity-structure correlations in divergent lectin-evolution: fine specificity of chicken galectin CG-14 and computational analysis of flexible ligand docking for CG-14 and the closely related CG-16." Glycobiology, 17 165-184. | Read More >>
• S. Tomaselli, L. Ragona, L. Zetta, M. Assfalg, P. Ferranti, R. Longhi, A. M. J. J. Bonvin and H. Molinari. (2007) "NMR-based modeling and binding studies of a ternary complex between chicken liver bile acid binding protein and bile acids." Proteins: Struc. Funct. & Bioinformatic, 69 177-191. | Read More >>
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